Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4322

SINE2-5b_Cicl

SINE2-5b_Cicl, a novel SINE retroposon from the Citrus clementina genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-5b_Cicl
Source:
Citrus clementina
Organism:
Citrus clementina
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4322-4322 (2023)
Abstract:
Analyzed genome: Citrus clementina v1.0 (Phytozome). Consensus of 3 seqs; mean 98.73% identity to consensus. Additional features: tRNA-related region (1-92); A box (14-25); B box (68-78); tRNA-unrelated region (93-175); poly A tail (176-187). 11 or 13 nt TSDs. SINE2-5_Cicl variants a and b share 81.20% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute