Repbase Reports |
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| 2023, Volume 23, Issue 6 |
| June 30, 2023 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4156 |
SINE2-6d_Spu |
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SINE2-6d_Spu, a novel SINE retroposon from the Salix purpurea genome. |
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Submitted: 05-Jun-2023 |
Accepted: 30-Jun-2023 |
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Key Words: SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-6d_Spu |
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Source: Salix purpurea |
Organism: Salix purpurea |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE retroposons from plant genomes. |
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Journal: Repbase Reports 23(6), 4156-4156 (2023) |
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Abstract: Analyzed genome: Salix purpurea v5.1 (Phytozome). Consensus of 9 seqs; mean 88.99% identity to consensus. Additional features: tRNA-related region (1-81); A box (14-24); B box (57-67; 110-120); tRNA-unrelated region (82-134; 135-238); poly A tail (239-253). SINE2-6_Spu variants a to d share 80.10% similarity.
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Derived: |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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