Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4302

SINE2-8_SBi

SINE2-8_SBi, a novel SINE retroposon from the Sorghum bicolor genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8_SBi
Source:
Sorghum bicolor
Organism:
Sorghum bicolor
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4302-4302 (2023)
Abstract:
Analyzed genome: Sorghum bicolor v3.1.1 (Phytozome). Consensus of 35 seqs; mean 78.63% identity to consensus. Additional features: tRNA-related region (1-82); A box (15-25); B box (58-68); tRNA-unrelated region (83-328); poly T tail (329-335). Mostly 5p truncated copies; visible TSDs in complete length copies.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute