Repbase Reports

2023, Volume 23, Issue 6
June 30, 2023
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4202

SINE2-8a_Ciar

SINE2-8a_Ciar, a novel SINE retroposon from the Cicer arietinum genome.

Submitted:
05-Jun-2023
Accepted:
30-Jun-2023
Key Words:
SINE2/tRNA; SINE; Non-LTR Retrotransposon; Transposable Element; SINE2-8a_Ciar
Source:
Cicer arietinum
Organism:
Cicer arietinum
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Cicereae; Cicer
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE retroposons from plant genomes.
Journal:
Repbase Reports 23(6), 4202-4202 (2023)
Abstract:
Analyzed genome: Cicer arietinum v1.0 (Phytozome). Consensus of 50 seqs; mean 79.71% identity to consensus. Additional features: tRNA-related region (1-82); A box (13-24); B box (58-68); tRNA-unrelated region (83-128); poly A tail (129-137). SINE2-8_Ciar variants a and b share 84.70% similarity.
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute