Repbase Reports
2024, Volume 24, Issue 6
June 23, 2024
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4372

18S-25S_rDNA_Ipa

18S-25S_rDNA_Ipa, the 18S-25S rDNA unit from the yerba mate genome.

Submitted:
08-Jun-2024 		Accepted:
23-Jun-2024
Key Words:
rRNA; Multicopy gene; 18S-25S_rDNA_Ipa
Source:
Ilex paraguariensis 		Organism:
Ilex paraguariensis 		Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Aguilera,P.M. and Grabiele,M.
Title:
The ribosomal units from the yerba mate genome.
Journal:
Repbase Reports 24(6), 4372-4372 (2024)
Abstract:
Consensus of 39 sequences (2 entire length) from Ilex paraguariensis GCA_963454935.2, then curated with 2.3 million genomic reads of the species (19453X coverage) from ERR12037359 and ERR12040303 that mapped at 97% stringency and hold 99.6% of global sequence similarity. The transcribed region from this genomic sequence is 99.9% identical to the reported RNA sequence of the species (Aguilera et al. 2016; http://dx.doi.org/10.1080/11263504.2015.1018982). Additional features: complete intergenic spacer (IGS) unit (1-4883); 3' external transcribed spacer (3ETS) (1-175); IGS non-transcribed region (176-3974); 5ETS (3975-4883); repetitive block at the IGS, composed by 38 repetitions of 32 nt each with overall 96% identity (162-1372); direct repeat stretches of 791/750 nt at the IGS that share 76.4% identity (2655-3445; 3497-4246); TATA-like sequence (3940-3974); complete transcribed ribosomal unit (3975-10760; 1-175); 18S rRNA gene (4884-6692); internal transcribed spacer 1 (ITS1) (6693-6961); 5.8S rRNA gene(6962-7120); ITS2 (7121-7385); 25S rRNA gene (7386-10760).
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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