Repbase Reports |
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| 2024, Volume 24, Issue 6 |
| June 30, 2024 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4371 |
5S_rDNA_Ipa |
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5S_rDNA_Ipa, the 5S rDNA unit from the yerba mate genome. |
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Submitted: 08-Jun-2024 |
Accepted: 30-Jun-2024 |
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Key Words: rRNA; Multicopy gene; 5S_rDNA_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Aguilera,P.M. and Grabiele,M. |
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Title: The ribosomal units from the yerba mate genome. |
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Journal: Repbase Reports 24(6), 4371-4371 (2024) |
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Abstract: Consensus of 190 entire length sequences from Ilex paraguariensis GCA_963454935.2, then curated with 0.5 million genomic reads of the species (86242X coverage) from ERR12037359 and ERR12040303 that mapped at 97% stringency and hold 98.1% of global sequence similarity. Additional features: non-transcribed spacer (NTS) (1-391); postulated transcription termination site (TTS) (1-5); region of the NTS 83% similar to the internal portion of a Gypsy element 299 nt upstream the poly-purine tract (PPT) (87-186); postulated transcription initiation site (TIS) (362-391); -30 TATA-like sequence (362-372); -14 GC dinucleotide (378-379); -1 C nucleotide (391); 5S rRNA gene(392-511); A box (441-452); Intermediate Element (IE) (461-462); C box (471-480); RNA binding domains (401-412; 451-467; 490-499).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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