Repbase Reports |
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| 2024, Volume 24, Issue 6 |
| June 23, 2024 |
| Copyright © 2001-2024 - Genetic Information Research Institute, California |
| ISSN# 1534-830X |
| Page 4370 |
SINE3-1_Ipa |
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SINE3-1_Ipa, a novel SINE retroposon derived from the 5S rRNA in the yerba mate genome. |
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Submitted: 08-Jun-2024 |
Accepted: 23-Jun-2024 |
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Key Words: SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element; SINE3-1_Ipa |
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Source: Ilex paraguariensis |
Organism: Ilex paraguariensis |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex |
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Authors: Grabiele,M. and Aguilera,P.M. |
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Title: SINE3-1_Ipa, a novel SINE retroposon derived from the 5S rRNA in the yerba mate genome. |
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Journal: Repbase Reports 24(6), 4370-4370 (2024) |
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Abstract: Analyzed genome of Ilex paraguariensis: GCA_963454935.2. Consensus of 184 seqs (all with tail); mean 85.6% identity to consensus. The 5S derived region of this SINE is 100% identical to the consensus 5S rRNA gene of the species. TSDs measured in 20 sequences range 7-19 nt in length (mean 14 nt) and are 70% AT-rich. Additional features: 5S rRNA gene related region (1-120); A box (50-61); Intermediate Element (IE) (70-71); C box (80-89); RNA binding domains (10-21; 70-76; 99-108); Non-transcribed spacer transcription termination site (TTS) related region (121-123); poly A tail (124-138). This sequence constitutes the first report of a SINE3 at Viridiplantae.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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