Repbase Reports

2024, Volume 24, Issue 6
June 30, 2024
Copyright © 2001-2024 - Genetic Information Research Institute, California
ISSN# 1534-830X
Page 4370

SINE3-1_Ipa

SINE3-1_Ipa, a novel SINE retroposon derived from the 5S rRNA in the yerba mate genome.

Submitted:
08-Jun-2024
Accepted:
30-Jun-2024
Key Words:
SINE3/5S; SINE; Non-LTR Retrotransposon; Transposable Element; SINE3-1_Ipa
Source:
Ilex paraguariensis
Organism:
Ilex paraguariensis
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Aquifoliales; Aquifoliaceae; Ilex
[] Authors:
Grabiele,M. and Aguilera,P.M.
Title:
SINE3-1_Ipa, a novel SINE retroposon derived from the 5S rRNA in the yerba mate genome.
Journal:
Repbase Reports 24(6), 4370-4370 (2024)
Abstract:
Analyzed genome of Ilex paraguariensis: GCA_963454935.2. Consensus of 184 seqs (all with tail); mean 85.6% identity to consensus. The 5S derived region of this SINE is 100% identical to the consensus 5S rRNA gene of the species. TSDs measured in 20 sequences range 7-19 nt in length (mean 14 nt) and are 70% AT-rich. Additional features: 5S rRNA gene related region (1-120); A box (50-61); Intermediate Element (IE) (70-71); C box (80-89); RNA binding domains (10-21; 70-76; 99-108); Non-transcribed spacer transcription termination site (TTS) related region (121-123); poly A tail (124-138). This sequence constitutes the first report of a SINE3 at Viridiplantae.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2024 - Genetic Information Research Institute